CADDIS Volume 4: Data Analysis
Predicting Environmental Conditions from Biological Observations (PECBO) Appendix
- Using Existing Taxon-Environment
- Estimating Taxon-Environment
- Computing Inferences
- R Scripts
Topics in Estimating Taxon-Environment Relationships
Taxon-environment relationships can be expressed in terms of central tendencies that describe the average environmental conditions under which a taxon is likely to occur. Using this method, the single-value descriptor of the taxon-environment relationship, uwa, for taxon j is estimated by computing the mean of the environmental variable of interest at the sites in which the taxon is observed:
where N is the total number of sites and xi is the value of the environmental variable of interest at site i. For presence/absence data, Yij is equal to 1 when taxon j is present at site i and 0 when taxon j is absent. For abundance data, Yij is the abundance of taxon j at site i.
Statistical scripts for computing central tendancies are available under the R Scripts tab of this section.
Once central tendencies are computed for each taxon, one can use them to infer conditions at a new site based only on biological observations, by computing a weighted average inference.